All functions

cells_to_genotypes()

cells_to_genotypes

check_complete_graph()

check_complete_graph

cluster_color_ramp()

cluster_color_ramp

construct_genotype_cluster_graph()

construct_genotype_cluster_graph

construct_genotype_cluster_graph_unsupervised()

Function that clusters genotypes into donors in an unsupervised manner (i.e. does not require the experimental design). This is useful if there is some doubt about the experimental design, or if one is not available.

get_shared()

get_shared

make_overlapping_mixture()

make_overlapping_mixture

membership_map()

membership_map

plot_cross_vaf()

plot_cross_vaf

plot_experimental_design()

plot_experimental_design

read_SOC_locations()

read_SOC_locations

read_experimental_design()

read_experimental_design

shared_genotypes()

shared_genotypes

shared_genotypes_relatedness()

shared_genotypes_relatedness