shared_genotypes

Function that compares genotype calls across two experiments

shared_genotypes(
  vcf1,
  vcf2,
  shared,
  experiment_1_name,
  experiment_2_name,
  ncounts = 10
)

Arguments

vcf1

the first vcf

vcf2

the second vcf

shared

numeric- the number of shared genotypes between the experiments

experiment_1_name

the name of experiment 1

experiment_2_name

the name of experiment 2

ncounts

numeric - the number of counts supporting each variant

Value

a data frame of the shared genotype clusters between the two experiments

Examples

# \donttest{
#' shared_genotypes()
# }